Capturing Transcriptomes From Single Cell Nuclei

Thursday, 5 October 2017 at 09:00

Add to Calendar ▼2017-10-05 09:00:002017-10-05 10:00:00Europe/LondonCapturing Transcriptomes From Single Cell NucleiRNA-Seq, Single Cell Analysis and Single Molecule Analysis 2017 in Coronado Island, CaliforniaCoronado Island, CaliforniaSELECTBIOenquiries@selectbiosciences.com

A method is presented for sequencing the transcriptome of a cell nucleus. Biological features of the nucleus are revealed including enrichment of certain transcripts and synthesis of precursors for non-coding RNAs. Current methods using protease dissociation of whole cells from tissue alters the transcriptome whereas nuclear transcriptomes are obtained without elevated temperature and harsh treatment.

Roger Lasken, Director of Single Cell Genomics, J. Craig Venter Institute

Roger Lasken

Professor Lasken leads a single cell genomics program at the J. Craig Venter Institute. His group developed the MDA method (sold as TempliPhi, GenomiPhi and REPLI-g) and was the first to sequence DNA from individual cells. Current work in the lab focuses on RNA-seq from single cells and nuclei (Grindberg, R. V. et al. RNA-sequencing from single nuclei, PNAS, USA, doi:10.1073/pnas.1319700110 (2013); Krishnaswami et al., Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons, Nature Protocols (2016), vol. 11, No. 3, 499; Lacar, et al. Nuclear RNA-seq of single neurons reveals molecular signatures of activation, Nature Communications (2016) Apr 19;7:11022. doi: 10.1038/ncomms11022. PMID: 27090946.