Tuesday, 24 September 201308:00 | Registration | | Optimisation of Growth for Food and Biofuel |
| | 09:00 | | Keynote Presentation Next Generation Crop Genomics Mario Caccamo, Head, Genome Analysis Centre, United Kingdom
In this presentation I will discuss some of the technical developments we have implemented at TGAC to tackle the assembly problem for complex crop genomes. I will also present bioinformatics tools we have designed to implement advanced crop genomics technologies such as re-sequencing of reduced representation libraries and bulk segregant approaches. |
| 10:00 | Coffee and Networking in Exhibiton Hall | 10:45 | Metabolic Engineering for Synthesis of Omega-3 Long Chain Polyunsaturated Fatty Acids in Transgenic Plants and Algae Johnathan Napier, Principal Investigator, Rothamsted Research, United Kingdom
Metabolic engineering of high value omega-3 polyunsaturated fatty acids has now been demonstrated in oilseed crops. Similar approaches have proved successful in microalgae. Further iterations are described to optimise the accumulation of non-native fatty acids in triacylglycerols. | 11:30 | Food Safety is a Critical Aspect of Food Security: Reducing the Acrylamide-forming Potential of Wheat, Potato and Rye Nigel Halford, Programme Leader, Rothamsted Research, United Kingdom
The formation of acrylamide from free asparagine and sugars during the cooking and processing of cereals, potatoes and other crops is one of the most difficult problems facing the food supply chain. This presentation will describe genetic and agronomic approaches to reducing the acrylamide-forming potential of wheat, rye and potato. | 12:15 | Technology Spotlight: The Right Technology and the Right Analysis; Getting the Most from your Experiments Nick Burgoyne, Senior Bioinformatician, Fios Genomics Ltd
Utilising the Invader chemistry platform, we demonstrate the best ways to work with high through-put, high dimension ‘omic data to ensure the findings and conclusions are statistically sound, unbiased and data driven using a systems biology and pathway approach to the analysis. | 12:30 | Lunch and Networking in Exhibition Hall | 13:30 | Poster Viewing Session | 14:15 | Applied Molecular Genetics for Improved Crop Yields Cristobal Uauy, Senior Scientist, The John Innes Centre, United Kingdom
Our work focuses on using molecular genetic approaches to identify genes related to wheat productivity. | 15:00 | From RNA Signalling in Flower Induction to a Novel Gene Allele for Crop Improvement Yiguo Hong, Professor, Hangzhou Normal University, China
In this presentation, I will talk about FT RNA trafficking in systemic florigen signalling, as well as our latest discovery of novel gene alleles for enhancing crop productivity. | 15:45 | Coffee and Networking in Exhibiton Hall | | RNA Silencing Mechanisms in Plants |
| | 16:30 | The Impact of Ligation Bias on Plant Small RNA Sequencing Tamas Dalmay, Director/Professor, University of East Anglia, United Kingdom
RNA ligases used during library generation for small RNA sequencing by NGS prefer certain molecules, which can form stable secondary structures with the adapters. We have developed new adapters called high definition (HD) adapters that contain degenerated nucleotides, which reduce the ligation bias. cDNA libraries of small RNAs were generated from four plant species using either traditional or HD adapters and sequenced by NGS. The impact of the ligation bias on plant small RNA sequencing will be presented at the conference. | 17:15 | Mobile Silencing RNAs Attila Molnar, Chancellor’s Fellow, University of Edinburgh , United Kingdom
RNA silencing is a gene regulatory mechanism that controls development, stress responses and molecular parasites such as viruses, transgenes and transposons. The sequence-specificity of this regulation relies on small non-coding RNA (sRNA) molecules. Spreading of RNA silencing across the plant has been recognized for nearly two decades, however, only recent publications demonstrated beyond a doubt that sRNAs act as mobile silencing signals. I will discuss the consequences of mobile sRNAs on target gene expression. | 18:00 | Round Table Discussions in the Exhibition Hall For more information click here. |
Wednesday, 25 September 2013 | Enhancing Plant Resistance to Disease |
| | 09:00 | | Keynote Presentation Genome Evolution in Filamentous Plant Pathogens: Why Bigger Can Be Better Sophien Kamoun, Senior Research Scientist, Sainsbury Laboratory, United Kingdom
The genomes of several lineages of filamentous plant pathogens have been shaped by repeat-driven expansions in contrast to the reduced genomes of many parasites and symbionts. This talk will review the properties and the mechanisms underlying the plasticity of repeat-rich genome compartments that contain genes involved in host interactions. |
| 10:00 | Coffee and Networking in Exhibiton Hall | 10:45 | | Keynote Presentation Phenotyping of Drought Responses in Combination with Haplotyping of Stress Genes in Barley Genotype Collection Dudits Dénes, Research Professor, Biological Research Center, Hungary, Hungary
We use a semi-robotic phenotyping platform for computer-controlled watering, digital and thermal imaging of barley plants. The EcoTILLING and the subsequent DNA sequencing define four (A-D) haplotypes of the HvA1 gene encoding the group 3 LEA protein. We establish a basic methodology for the integrated use of phenotyping and haplotyping data in characterization of genotype-dependent drought responses in barley. |
| | Genetic Engineering to Increase Yield from Livestock |
| | 11:45 | CANCELLED due to illness - Different Approaches to Breed for Resistance to Late Blight in Potato Richard Visser, Professor/Head, Wageningen University & Research Centre, Netherlands
Late blight is one of the most devastating diseases in potato. We have used the available genome sequences from the pathogen and the host plant to embark on different strategies to try and understand the interaction between the two and design methods for durable resistance against the pathogen. The status of the R-AVR cloning, analysis and deployment will be discussed. | 12:30 | Technology Spotlight: Commercially Viable Marker Assisted Breeding Using KASP Technology Darshna Vyas, Plant Genomics Specialist, LGC Genomics
KASP genotyping technology accelerates MAB programmes and can be applied at any point during the breeding cycle (including seed and leaf material), regardless of project size. From marker discovery, design and validation. Dusty will be discussing the recent collaboration with GCP which has enabled the development of thousands of KASP genotyping assays, which are now publically available to the whole agricultural community. | 12:45 | Lunch and Networking in Exhibition Hall | 13:30 | Poster Viewing Session | 14:15 | Rowland Biffen's Legacy is Spreading, with Insights from Rust in Mustards Eric Holub, Translational Plant Geneticist , Warwick University, United Kingdom
Biffen’s 1910 release of a yellow rust resistant wheat launched genetics as an applied discipline, for harnessing inheritance of natural variation to breed new animals and crops for human benefit. His legacy still informs modern translational research of rust diseases, for better bread and better brassicas. | 15:00 | Transgenic Barley in Applied Research and Biotechnology Goetz Hensel, Senior Scientist, Leibniz Institute of Plant Genetics and Crop Plant Research, Germany
A number of developed expression systems for functional gene analysis or the production of recombinant proteins in transgenic barley will be presented and examples employing these systems will be given. | 15:45 | Coffee and Networking in Exhibiton Hall | | The Use of Next Generation Sequencing and Bioinformatics |
| | 16:15 | The Ocean Plankton Metagenome and its Biotechnological Potential Chris Bowler, Director of Plant Biology, ENS/Centre National De La Recherche Scientifique, France
The Tara Oceans expedition recently completed a global ocean ecosystem study to understand the global impacts of plankton on the Earth system, as well as to explore their biotechnological potential. Preliminary findings from the expedition will be presented. | 17:00 | Unravelling Pathogen Virulence Strategies Through the Application of Transcriptomics and Real-time Imaging Murray Grant, Professor, University of Exeter, United Kingdom
Successful pathogens deploy a collection of “effector” molecules to attenuate plant defense surveillance systems. We study how virulent Pseudomonas syringae establishes disease in Arabidopsis thaliana following delivery of a suite of ~ 30 effector proteins into the plant cell. We use a combination of unbiased transcriptomics, reverse genetics and real time imaging combined with network inference modeling to understand pathogen virulence strategies and plant defense mechanisms. Here we discuss the contribution of jasmonates to disease progression and show that the chloroplast, the site of hormone biosynthesis, is a key target of bacterial effectors. | 17:45 | Close of Conference |
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